TF_ChIP-seq_ENCSR645JVW
TF_ChIP-seq ENCSR645JVW [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="POLR2AphosphoS5"]
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| Id: | TF_ChIP-seq/ENCSR645JVW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR645JVW [biosamplesummary="Homo sapiens vagina tissue female adult (51 years)" and target="POLR2AphosphoS5"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN950DDF|/analyses/ENCAN950DDF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF893GLI|/files/ENCFF893GLI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 18283653 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF893GLI|/files/ENCFF893GLI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF893GLI|/files/ENCFF893GLI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR645JVW | float |
TF_ChIP-seq_ENCSR645JVW |
TF_ChIP-seq ENCSR645JVW [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="POLR2AphosphoS5"]
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[7.11, 404] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF388UZV.bed.gz | 810.25 KB | 8fdf18abc4fd73945b9958df3a46ebeb |
| ENCFF388UZV.bed.gz.dvc | 100.0 B | ac352a4992a67ab6c961416435ca29e8 |
| ENCFF388UZV.tabix.bed.gz | 595.55 KB | dad18ef918ca278770b9d2b44c8c7a5e |
| ENCFF388UZV.tabix.bed.gz.dvc | 106.0 B | 8d0399858bbafeac5da085f15d0a57bd |
| ENCFF388UZV.tabix.bed.gz.tbi | 249.63 KB | 012e5cea2ef2870cc924c88a44f62f11 |
| ENCFF388UZV.tabix.bed.gz.tbi.dvc | 110.0 B | 2001c93e90a26a075df030e336ac99be |
| genomic_resource.yaml | 3.38 KB | 8a4eaf162197579f06aea0d6f8791ec6 |
| genomic_resource_original.yaml | 3.24 KB | 81965e7af02241bebfad702ad2cfac7c |
| statistics/ |