TF_ChIP-seq_ENCSR644WQN
TF_ChIP-seq ENCSR644WQN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF556" and target="ZNF556"]
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| Id: | TF_ChIP-seq/ENCSR644WQN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR644WQN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF556" and target="ZNF556"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF556 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN398ZYL|/analyses/ENCAN398ZYL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN398ZYL|/analyses/ENCAN398ZYL/} has in progress subobject document {941a080d-7a31-4642-9583-7101b5bf0dd3|/documents/941a080d-7a31-4642-9583-7101b5bf0dd3/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF523RVU|/files/ENCFF523RVU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF523RVU|/files/ENCFF523RVU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF904IXE|/files/ENCFF904IXE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF904IXE|/files/ENCFF904IXE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.39. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF340TNC|/files/ENCFF340TNC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 4.69. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF008WIK|/files/ENCFF008WIK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 4.69. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR644WQN | float |
TF_ChIP-seq_ENCSR644WQN |
TF_ChIP-seq ENCSR644WQN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF556" and target="ZNF556"]
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[11.2, 376] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF340TNC.bed.gz | 351.4 KB | 449a9b7e9e5accd6230cf1566f880cf4 |
| ENCFF340TNC.bed.gz.dvc | 100.0 B | 4cbf4381d2ce5e87a400abe387450720 |
| ENCFF340TNC.tabix.bed.gz | 283.09 KB | 82da06a04c7f2732988cf139f1d48b56 |
| ENCFF340TNC.tabix.bed.gz.dvc | 106.0 B | 380d117974de4ed0b9b517fc4c9f914f |
| ENCFF340TNC.tabix.bed.gz.tbi | 112.5 KB | 29a01e5106ee40a474f39ce12410e482 |
| ENCFF340TNC.tabix.bed.gz.tbi.dvc | 110.0 B | 957e38c225dd70ff1e2dde1c4b56fe1c |
| genomic_resource.yaml | 5.49 KB | df2771b888325c8c32fc6b6f6e1571e6 |
| genomic_resource_original.yaml | 5.33 KB | 26d1f00b77fd6cb80cde4641d5fb7f31 |
| statistics/ |