TF_ChIP-seq_ENCSR643VTW
TF_ChIP-seq ENCSR643VTW [biosample_summary="Homo sapiens K562" and target="SMARCA4"]
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| Id: | TF_ChIP-seq/ENCSR643VTW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR643VTW [biosamplesummary="Homo sapiens K562" and target="SMARCA4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN344CDU|/analyses/ENCAN344CDU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF361RWX|/files/ENCFF361RWX/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF361RWX|/files/ENCFF361RWX/}, {ENCFF300RMI|/files/ENCFF300RMI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 4.42 and a self consistency ratio of 1.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF517ZLV|/files/ENCFF517ZLV/}, {ENCFF386KCW|/files/ENCFF386KCW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 4.42 and a self consistency ratio of 1.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR643VTW | float |
TF_ChIP-seq_ENCSR643VTW |
TF_ChIP-seq ENCSR643VTW [biosample_summary="Homo sapiens K562" and target="SMARCA4"]
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[13.2, 1.14e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF361RWX.bed.gz | 454.76 KB | b1f87d1b831be06b49195b578bc64bbc |
| ENCFF361RWX.bed.gz.dvc | 100.0 B | 1cf798df34292e6423176f8b8f29b8aa |
| ENCFF361RWX.tabix.bed.gz | 328.78 KB | 8bef709ef4398390e06241d0cdd7d7cd |
| ENCFF361RWX.tabix.bed.gz.dvc | 106.0 B | 647bb602daa1cedb951e591f03a180c8 |
| ENCFF361RWX.tabix.bed.gz.tbi | 142.99 KB | 0abc0793405da7c94e47349d7e26ac38 |
| ENCFF361RWX.tabix.bed.gz.tbi.dvc | 110.0 B | 9cf419a50b4cee6bd68be81a4c286c9f |
| genomic_resource.yaml | 2.67 KB | 7be80037e642abf1e259b5b20e17819b |
| genomic_resource_original.yaml | 2.57 KB | ccfae0cf661374101f55f00d1922bb6d |
| statistics/ |