TF_ChIP-seq_ENCSR643JRH
TF_ChIP-seq ENCSR643JRH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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| Id: | TF_ChIP-seq/ENCSR643JRH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR643JRH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAZ output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN553QQH|/analyses/ENCAN553QQH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN553QQH|/analyses/ENCAN553QQH/} has in progress subobject document {751a8c3a-8948-44e1-ad13-b0bf27440f4c|/documents/751a8c3a-8948-44e1-ad13-b0bf27440f4c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF139XXX|/files/ENCFF139XXX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF139XXX|/files/ENCFF139XXX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF674XZS|/files/ENCFF674XZS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF674XZS|/files/ENCFF674XZS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR643JRH | float |
TF_ChIP-seq_ENCSR643JRH |
TF_ChIP-seq ENCSR643JRH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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[17.3, 2.78e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF389FLV.bed.gz | 482.88 KB | c6f1dde2dbef858020f1a1e40b03918d |
| ENCFF389FLV.bed.gz.dvc | 100.0 B | a419396fd787b08f176a29a159a98d44 |
| ENCFF389FLV.tabix.bed.gz | 373.23 KB | 85a0502d62351f2395313d6b00d95b5c |
| ENCFF389FLV.tabix.bed.gz.dvc | 106.0 B | 67a41fb7475f004af18e159f357c7437 |
| ENCFF389FLV.tabix.bed.gz.tbi | 137.88 KB | 28c4d42ef8b1a03ad6c1743de8339574 |
| ENCFF389FLV.tabix.bed.gz.tbi.dvc | 110.0 B | 33b560f47263882f68f3c201967d80aa |
| genomic_resource.yaml | 4.44 KB | 8a1e118265bc5684c73234397a9d3c18 |
| genomic_resource_original.yaml | 4.28 KB | 3dfb46dde5b34ed9ec4e0da8ec74de36 |
| statistics/ |