TF_ChIP-seq_ENCSR642VZY
TF_ChIP-seq ENCSR642VZY [biosample_summary="Homo sapiens K562" and target="KDM4B"]
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| Id: | TF_ChIP-seq/ENCSR642VZY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR642VZY [biosamplesummary="Homo sapiens K562" and target="KDM4B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN867FYB|/analyses/ENCAN867FYB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN867FYB|/analyses/ENCAN867FYB/} has in progress subobject document {f8455e96-9d06-41ae-896c-d75833a1dba0|/documents/f8455e96-9d06-41ae-896c-d75833a1dba0/} audit_warning: Processed alignments file {ENCFF003XKJ|/files/ENCFF003XKJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16238447 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KDM4B-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF451UWK|/files/ENCFF451UWK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17190167 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KDM4B-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF304PGC|/files/ENCFF304PGC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 4.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR642VZY | float |
TF_ChIP-seq_ENCSR642VZY |
TF_ChIP-seq ENCSR642VZY [biosample_summary="Homo sapiens K562" and target="KDM4B"]
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[5.72, 432] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF304PGC.bed.gz | 138.08 KB | e6195dee5d23f38a81be36da0b1c738f |
| ENCFF304PGC.bed.gz.dvc | 100.0 B | e2a6927d28aecba0d0463f618d24daac |
| ENCFF304PGC.tabix.bed.gz | 109.25 KB | 5c349b8b0d18ccdde0e4a31c9261f22b |
| ENCFF304PGC.tabix.bed.gz.dvc | 106.0 B | fc6bb6f5458daa8d0fe67efc0c4bc00e |
| ENCFF304PGC.tabix.bed.gz.tbi | 58.48 KB | 9d57d1ac75af4696af873db3c0302b3a |
| ENCFF304PGC.tabix.bed.gz.tbi.dvc | 109.0 B | 8b363bacc52dec3e3f58a8df0e5d1fd5 |
| genomic_resource.yaml | 3.1 KB | 9bd53e57fe2832016ff70de032ba2a95 |
| genomic_resource_original.yaml | 3.01 KB | dd3b5131a1e0a6c88c83ce20e6800773 |
| statistics/ |