TF_ChIP-seq_ENCSR642PQK
TF_ChIP-seq ENCSR642PQK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP4" and target="SP4"]
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| Id: | TF_ChIP-seq/ENCSR642PQK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR642PQK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP4" and target="SP4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SP4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN455HUY|/analyses/ENCAN455HUY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF939LLI|/files/ENCFF939LLI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF939LLI|/files/ENCFF939LLI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.95. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF360VJC|/files/ENCFF360VJC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF360VJC|/files/ENCFF360VJC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR642PQK | float |
TF_ChIP-seq_ENCSR642PQK |
TF_ChIP-seq ENCSR642PQK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP4" and target="SP4"]
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[16.1, 510] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF938KVY.bed.gz | 412.98 KB | 4fa22400a7d35d31bff6247414758f41 |
| ENCFF938KVY.bed.gz.dvc | 100.0 B | 2c19deb99e2154552216377f094ef5d1 |
| ENCFF938KVY.tabix.bed.gz | 335.37 KB | b81ff0b0dbf538684b53732ca66e7111 |
| ENCFF938KVY.tabix.bed.gz.dvc | 106.0 B | 77409701ec766932d822d9a349da172d |
| ENCFF938KVY.tabix.bed.gz.tbi | 121.55 KB | 36b45ba7b120f62a10843ae0a0f59b40 |
| ENCFF938KVY.tabix.bed.gz.tbi.dvc | 110.0 B | 2d8b8eeeb6c7a09b9f9934d2cffc6bf2 |
| genomic_resource.yaml | 4.21 KB | e3c8b929789f30b77b4a3c31edb74ef5 |
| genomic_resource_original.yaml | 4.06 KB | 1fd5c0069ce393b91eed695c51a00ce5 |
| statistics/ |