TF_ChIP-seq_ENCSR639GWS
TF_ChIP-seq ENCSR639GWS [biosample_summary="Homo sapiens A549" and target="KDM1A"]
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| Id: | TF_ChIP-seq/ENCSR639GWS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR639GWS [biosamplesummary="Homo sapiens A549" and target="KDM1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN520PTQ|/analyses/ENCAN520PTQ/} has in progress subobject document {eabab37b-ea8e-4684-9b25-fccce71d1c3d|/documents/eabab37b-ea8e-4684-9b25-fccce71d1c3d/} audit_internal_action: Released analysis {ENCAN520PTQ|/analyses/ENCAN520PTQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF745XXE|/files/ENCFF745XXE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17441251 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KDM1A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF745XXE|/files/ENCFF745XXE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF745XXE|/files/ENCFF745XXE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.19. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF486TEQ|/files/ENCFF486TEQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF486TEQ|/files/ENCFF486TEQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR639GWS | float |
TF_ChIP-seq_ENCSR639GWS |
TF_ChIP-seq ENCSR639GWS [biosample_summary="Homo sapiens A549" and target="KDM1A"]
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[10.1, 299] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693LFI.bed.gz | 125.89 KB | 6a40347dd65f1c5e2aee059d8120d862 |
| ENCFF693LFI.bed.gz.dvc | 100.0 B | 3be4383c0d1923615dfd01ee3b88f738 |
| ENCFF693LFI.tabix.bed.gz | 93.02 KB | 5ab18986b57b8276da265fb4724bf1c8 |
| ENCFF693LFI.tabix.bed.gz.dvc | 105.0 B | 4ae6d78b12d49576da601f3ecabe6f8a |
| ENCFF693LFI.tabix.bed.gz.tbi | 52.71 KB | adb177d09a33078f144ab1316a66904d |
| ENCFF693LFI.tabix.bed.gz.tbi.dvc | 109.0 B | e14dec10a9d3033ef977c9966c99ac11 |
| genomic_resource.yaml | 4.69 KB | 94b9663196be8d3ca450c995121faa12 |
| genomic_resource_original.yaml | 4.59 KB | c64e17c6c95d1b62c975925815661ff7 |
| statistics/ |