TF_ChIP-seq_ENCSR636YLV
TF_ChIP-seq ENCSR636YLV [biosample_summary="Homo sapiens A549" and target="MAZ"]
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| Id: | TF_ChIP-seq/ENCSR636YLV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR636YLV [biosamplesummary="Homo sapiens A549" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN743DUM|/analyses/ENCAN743DUM/} has in progress subobject document {ac14272f-0211-4620-801d-de8107d9a1e1|/documents/ac14272f-0211-4620-801d-de8107d9a1e1/} audit_internal_action: Released analysis {ENCAN743DUM|/analyses/ENCAN743DUM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF020APM|/files/ENCFF020APM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17421397 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAZ-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF652DIB|/files/ENCFF652DIB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 3.51. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR636YLV | float |
TF_ChIP-seq_ENCSR636YLV |
TF_ChIP-seq ENCSR636YLV [biosample_summary="Homo sapiens A549" and target="MAZ"]
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[4.8, 265] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652DIB.bed.gz | 68.1 KB | 95f0ae2548c45f4150c579b85fc477ea |
| ENCFF652DIB.bed.gz.dvc | 99.0 B | 7670dd6a7d99a6cd1373574f6da1de1a |
| ENCFF652DIB.tabix.bed.gz | 44.92 KB | 48e781d100f27f2da39035572f2b204c |
| ENCFF652DIB.tabix.bed.gz.dvc | 105.0 B | 54d0851ae23ad9fc765707dd6443981d |
| ENCFF652DIB.tabix.bed.gz.tbi | 33.95 KB | dcc0049f7f8bd77ab51634a205747ef4 |
| ENCFF652DIB.tabix.bed.gz.tbi.dvc | 109.0 B | 41687dc1c8e70bf4fdcbb00b910482e2 |
| genomic_resource.yaml | 2.59 KB | 8a66aac7582e2201ef64c91e5d477a09 |
| genomic_resource_original.yaml | 2.5 KB | 74da0d20b412f63f4b26008a25ea40f8 |
| statistics/ |