TF_ChIP-seq_ENCSR636MKU
TF_ChIP-seq ENCSR636MKU [biosample_summary="Homo sapiens GM12878" and target="BACH1"]
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| Id: | TF_ChIP-seq/ENCSR636MKU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR636MKU [biosamplesummary="Homo sapiens GM12878" and target="BACH1"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN560IFU|/analyses/ENCAN560IFU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF665UFO|/files/ENCFF665UFO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF665UFO|/files/ENCFF665UFO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF209ASC|/files/ENCFF209ASC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF209ASC|/files/ENCFF209ASC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.10. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR636MKU | float |
TF_ChIP-seq_ENCSR636MKU |
TF_ChIP-seq ENCSR636MKU [biosample_summary="Homo sapiens GM12878" and target="BACH1"]
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[10.9, 7.85e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF012JXJ.bed.gz | 430.11 KB | 444df22c98d4fcff23ed0065c0dcd22e |
| ENCFF012JXJ.bed.gz.dvc | 100.0 B | e3257900fb34e456acd79d5f111cd57d |
| ENCFF012JXJ.tabix.bed.gz | 302.51 KB | 016037b3407b78234a7630da7c6f94a4 |
| ENCFF012JXJ.tabix.bed.gz.dvc | 106.0 B | 42ebfff995885186b4fb57e63d100fd5 |
| ENCFF012JXJ.tabix.bed.gz.tbi | 136.56 KB | 567e17f80d04cddf7217a2151ec4cf76 |
| ENCFF012JXJ.tabix.bed.gz.tbi.dvc | 110.0 B | 7d8d637b37df73927532e6342d153abd |
| genomic_resource.yaml | 3.95 KB | ba6d0eda477325f4cf362cc9a1f8b2d0 |
| genomic_resource_original.yaml | 3.85 KB | aab0275ab4cfd40dd90a523d24d8816d |
| statistics/ |