TF_ChIP-seq_ENCSR635SKD
TF_ChIP-seq ENCSR635SKD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3" and target="NFATC3"]
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| Id: | TF_ChIP-seq/ENCSR635SKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR635SKD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3" and target="NFATC3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN778GKW|/analyses/ENCAN778GKW/} has in progress subobject document {48b880cf-1c90-417f-b432-fbb380bf3565|/documents/48b880cf-1c90-417f-b432-fbb380bf3565/} audit_internal_action: Released analysis {ENCAN778GKW|/analyses/ENCAN778GKW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF967BWD|/files/ENCFF967BWD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF967BWD|/files/ENCFF967BWD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF021KIW|/files/ENCFF021KIW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF021KIW|/files/ENCFF021KIW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.68. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR635SKD | float |
TF_ChIP-seq_ENCSR635SKD |
TF_ChIP-seq ENCSR635SKD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3" and target="NFATC3"]
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[11.8, 389] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF482JEG.bed.gz | 124.41 KB | afe29db9ac80bd2266789ef63631b671 |
| ENCFF482JEG.bed.gz.dvc | 100.0 B | 8499630daac7593960fb8e42e2973853 |
| ENCFF482JEG.tabix.bed.gz | 88.03 KB | 68712774f04ee23f45a5ea89e0a0062c |
| ENCFF482JEG.tabix.bed.gz.dvc | 105.0 B | 73d164145777453bdebb7fec1e187aec |
| ENCFF482JEG.tabix.bed.gz.tbi | 50.68 KB | 6601fc7a69a7ef91c71403c6eef4ac8c |
| ENCFF482JEG.tabix.bed.gz.tbi.dvc | 109.0 B | 91044be8dab1c3493633cba1849c8fd1 |
| genomic_resource.yaml | 4.45 KB | 3a72e07e2117aee21b0af9014e037afa |
| genomic_resource_original.yaml | 4.29 KB | e6f370a9c5f7be7cda4e290bee2abb82 |
| statistics/ |