TF_ChIP-seq_ENCSR634GEO
TF_ChIP-seq ENCSR634GEO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F8" and target="E2F8"]
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| Id: | TF_ChIP-seq/ENCSR634GEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR634GEO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F8" and target="E2F8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E2F8 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN798JBK|/analyses/ENCAN798JBK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF248UJW|/files/ENCFF248UJW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF248UJW|/files/ENCFF248UJW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422OSN|/files/ENCFF422OSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422OSN|/files/ENCFF422OSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR634GEO | float |
TF_ChIP-seq_ENCSR634GEO |
TF_ChIP-seq ENCSR634GEO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F8" and target="E2F8"]
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[9.94, 637] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF603NUV.bed.gz | 544.06 KB | 1c5da7e650fbac627e413d71f3682cf6 |
| ENCFF603NUV.bed.gz.dvc | 100.0 B | 4fd6f8ee44496262f36a21170f8317cd |
| ENCFF603NUV.tabix.bed.gz | 449.02 KB | b3db100638583b926df158270476cc23 |
| ENCFF603NUV.tabix.bed.gz.dvc | 106.0 B | 5ba06ce8558f78991eb01de954193fa2 |
| ENCFF603NUV.tabix.bed.gz.tbi | 149.99 KB | 41ded550157db7fdc1a39e0b10e8df5a |
| ENCFF603NUV.tabix.bed.gz.tbi.dvc | 110.0 B | c77e7821fe33069760b1c05cd0cc6a6c |
| genomic_resource.yaml | 4.24 KB | 9f7c21dc756b76fcb07373aca80d11b6 |
| genomic_resource_original.yaml | 4.07 KB | 03abb8468ed281f2368bc43f5b6ca30d |
| statistics/ |