TF_ChIP-seq_ENCSR631JFU
TF_ChIP-seq ENCSR631JFU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9" and target="IRF9"]
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| Id: | TF_ChIP-seq/ENCSR631JFU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR631JFU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9" and target="IRF9"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF9 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN221OSH|/analyses/ENCAN221OSH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF803KXV|/files/ENCFF803KXV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF803KXV|/files/ENCFF803KXV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.17. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF141IMM|/files/ENCFF141IMM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 3.08. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR631JFU | float |
TF_ChIP-seq_ENCSR631JFU |
TF_ChIP-seq ENCSR631JFU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9" and target="IRF9"]
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[12.3, 496] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141IMM.bed.gz | 317.27 KB | 37d199c599c16bfa60af01cc7a3c6e7e |
| ENCFF141IMM.bed.gz.dvc | 100.0 B | 56ceab1b4a7a062e2225ed66472287b0 |
| ENCFF141IMM.tabix.bed.gz | 259.54 KB | b3d8e1babcb83037e57daf6463b6852f |
| ENCFF141IMM.tabix.bed.gz.dvc | 106.0 B | da03d8b5f777b3cfed31aea5fcbbf696 |
| ENCFF141IMM.tabix.bed.gz.tbi | 101.56 KB | ebef40cf8e12accc29a7648392cdc62d |
| ENCFF141IMM.tabix.bed.gz.tbi.dvc | 110.0 B | 920f52a3eca727e43068c183a95b97e8 |
| genomic_resource.yaml | 3.48 KB | ae7fbf8b44842e195a08b4e51e802eaa |
| genomic_resource_original.yaml | 3.32 KB | 574f8174ba87a78d4431925680d04d05 |
| statistics/ |