TF_ChIP-seq_ENCSR626HJW
TF_ChIP-seq ENCSR626HJW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"]
×
| Id: | TF_ChIP-seq/ENCSR626HJW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR626HJW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN104WVX|/analyses/ENCAN104WVX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF293IVR|/files/ENCFF293IVR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF293IVR|/files/ENCFF293IVR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.27. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF352SDX|/files/ENCFF352SDX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF352SDX|/files/ENCFF352SDX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.39. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF866ARI|/files/ENCFF866ARI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 2.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR626HJW | float |
TF_ChIP-seq_ENCSR626HJW |
TF_ChIP-seq ENCSR626HJW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"]
|
|
[11.5, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF866ARI.bed.gz | 262.38 KB | d14be75d0067bc809d8978d1628e2c91 |
| ENCFF866ARI.bed.gz.dvc | 100.0 B | c86df84ecdf9756e872b47f295d151ac |
| ENCFF866ARI.tabix.bed.gz | 203.32 KB | 5094b596e92bb845e2eebc78af77a503 |
| ENCFF866ARI.tabix.bed.gz.dvc | 106.0 B | a99378e403a125b6790aa0e9c33e0808 |
| ENCFF866ARI.tabix.bed.gz.tbi | 88.57 KB | 7e05ee69f482b193b2ebe1b842fb7a9a |
| ENCFF866ARI.tabix.bed.gz.tbi.dvc | 109.0 B | e014af3b05b962af3532937c7f4dc0c6 |
| genomic_resource.yaml | 4.76 KB | f002378ffc63eb684687ed830af3e627 |
| genomic_resource_original.yaml | 4.59 KB | d2726b4d0bf23dfdb12616f042908823 |
| statistics/ |