TF_ChIP-seq_ENCSR625ORP
TF_ChIP-seq ENCSR625ORP [biosample_summary="Homo sapiens HepG2" and target="SYNCRIP"]
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| Id: | TF_ChIP-seq/ENCSR625ORP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR625ORP [biosamplesummary="Homo sapiens HepG2" and target="SYNCRIP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN142PKL|/analyses/ENCAN142PKL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF880EQU|/files/ENCFF880EQU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9289767 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SYNCRIP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF221UBB|/files/ENCFF221UBB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11852754 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SYNCRIP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF880EQU|/files/ENCFF880EQU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF880EQU|/files/ENCFF880EQU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF221UBB|/files/ENCFF221UBB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF221UBB|/files/ENCFF221UBB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR625ORP | float |
TF_ChIP-seq_ENCSR625ORP |
TF_ChIP-seq ENCSR625ORP [biosample_summary="Homo sapiens HepG2" and target="SYNCRIP"]
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[3.95, 85.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF380TJT.bed.gz | 1.08 KB | a2b696f4cb520051989d7aee75b9d2a6 |
| ENCFF380TJT.bed.gz.dvc | 98.0 B | c7153e26b2a7d744fa34692117b74b1f |
| ENCFF380TJT.tabix.bed.gz | 801.0 B | e00e41d87d7ca38413b00e0022fa9b86 |
| ENCFF380TJT.tabix.bed.gz.dvc | 103.0 B | 5818b3e51c92111abbd28c84c41a4a47 |
| ENCFF380TJT.tabix.bed.gz.tbi | 1.51 KB | ac84d99428d2419ef51e207843a68b6a |
| ENCFF380TJT.tabix.bed.gz.tbi.dvc | 108.0 B | 80c57564da2264acc2b0cd871b787e5c |
| genomic_resource.yaml | 4.95 KB | 534d37861e6261685dbf31619ecb9ab5 |
| genomic_resource_original.yaml | 4.85 KB | 0411b11e25200c7d31f9ee967f73b5f2 |
| statistics/ |