TF_ChIP-seq_ENCSR623TZE
TF_ChIP-seq ENCSR623TZE [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4" and target="SMAD4"]
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| Id: | TF_ChIP-seq/ENCSR623TZE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR623TZE [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4" and target="SMAD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN145CHM|/analyses/ENCAN145CHM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF174GIJ|/files/ENCFF174GIJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF174GIJ|/files/ENCFF174GIJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.35. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF950CZH|/files/ENCFF950CZH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF950CZH|/files/ENCFF950CZH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.05. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR623TZE | float |
TF_ChIP-seq_ENCSR623TZE |
TF_ChIP-seq ENCSR623TZE [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4" and target="SMAD4"]
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[9.44, 484] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF126SGU.bed.gz | 53.14 KB | da457410c249c67a5ba4d6c2d571e081 |
| ENCFF126SGU.bed.gz.dvc | 99.0 B | b551be382ee442deab2c305f782aa485 |
| ENCFF126SGU.tabix.bed.gz | 36.59 KB | d6c011559301b98d432b91a491dadbf3 |
| ENCFF126SGU.tabix.bed.gz.dvc | 105.0 B | 5d4a01aba2acbd250089dc34e67b543b |
| ENCFF126SGU.tabix.bed.gz.tbi | 29.84 KB | 5eea469e9e16b91561fb4b7444356318 |
| ENCFF126SGU.tabix.bed.gz.tbi.dvc | 109.0 B | 53875ba96f91f431c22a1808d749623b |
| genomic_resource.yaml | 4.23 KB | ebff1ba91aa5c860b772452f239cc2f5 |
| genomic_resource_original.yaml | 4.07 KB | d5c0ae1de6b1fd1d400561275a1e6b4d |
| statistics/ |