TF_ChIP-seq_ENCSR623RFC
TF_ChIP-seq ENCSR623RFC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110" and target="SP110"]
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| Id: | TF_ChIP-seq/ENCSR623RFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR623RFC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110" and target="SP110"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SP110 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN977LHP|/analyses/ENCAN977LHP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF996XCW|/files/ENCFF996XCW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF996XCW|/files/ENCFF996XCW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.53. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF768GYB|/files/ENCFF768GYB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF768GYB|/files/ENCFF768GYB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.74. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF342ETP|/files/ENCFF342ETP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.18. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR623RFC | float |
TF_ChIP-seq_ENCSR623RFC |
TF_ChIP-seq ENCSR623RFC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110" and target="SP110"]
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[7.88, 289] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF342ETP.bed.gz | 69.6 KB | 36177e73e4cc29ad5aebfdb9a3e6596b |
| ENCFF342ETP.bed.gz.dvc | 99.0 B | 2bf4d408b24b00dce6344672ae7873b6 |
| ENCFF342ETP.tabix.bed.gz | 55.67 KB | 9af178b6a145350eb15f962271c58621 |
| ENCFF342ETP.tabix.bed.gz.dvc | 105.0 B | d2c2161a10ab36e0167132e08578356e |
| ENCFF342ETP.tabix.bed.gz.tbi | 34.71 KB | 2c7481d8f1f50ffa0f55fe7e3d8322f7 |
| ENCFF342ETP.tabix.bed.gz.tbi.dvc | 109.0 B | 7dcb899cda1c610d5c947c413b0922a0 |
| genomic_resource.yaml | 4.75 KB | d9741e3c5c65584a24683d4eed952f39 |
| genomic_resource_original.yaml | 4.59 KB | c68781bd214766d840275e821c229245 |
| statistics/ |