TF_ChIP-seq_ENCSR623KNM
TF_ChIP-seq ENCSR623KNM [biosample_summary="Homo sapiens A549" and target="ELK1"]
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| Id: | TF_ChIP-seq/ENCSR623KNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR623KNM [biosamplesummary="Homo sapiens A549" and target="ELK1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN173EVJ|/analyses/ENCAN173EVJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN173EVJ|/analyses/ENCAN173EVJ/} has in progress subobject document {05b773d7-035d-4e7d-95a9-8eca6c5f21ea|/documents/05b773d7-035d-4e7d-95a9-8eca6c5f21ea/} audit_warning: Processed alignments file {ENCFF903JFI|/files/ENCFF903JFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19545379 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELK1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF861IFM|/files/ENCFF861IFM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14543627 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELK1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903JFI|/files/ENCFF903JFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903JFI|/files/ENCFF903JFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.18. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR623KNM | float |
TF_ChIP-seq_ENCSR623KNM |
TF_ChIP-seq ENCSR623KNM [biosample_summary="Homo sapiens A549" and target="ELK1"]
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[4.97, 536] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF486IUH.bed.gz | 8.54 KB | 8b6547b8bd93661953860def29f72a35 |
| ENCFF486IUH.bed.gz.dvc | 98.0 B | d17f5c4f9e84c0c661890b946860a27c |
| ENCFF486IUH.tabix.bed.gz | 5.4 KB | 46f43f1b5212306198c9d5f6dd71c2ef |
| ENCFF486IUH.tabix.bed.gz.dvc | 104.0 B | fa93bbfc4e1c4ea5829fdc6d128e5a66 |
| ENCFF486IUH.tabix.bed.gz.tbi | 8.57 KB | 8c92e4b63f5d477a9f579b85c9f905be |
| ENCFF486IUH.tabix.bed.gz.tbi.dvc | 108.0 B | 470ecb6d4038a99184285c96f940ff1f |
| genomic_resource.yaml | 3.87 KB | c91f592c301292cce533d80a000d1a73 |
| genomic_resource_original.yaml | 3.77 KB | 9934d5bb6de103f196eb9337b33ad53f |
| statistics/ |