TF_ChIP-seq_ENCSR622AMZ
TF_ChIP-seq ENCSR622AMZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761" and target="ZNF761"]
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| Id: | TF_ChIP-seq/ENCSR622AMZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR622AMZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761" and target="ZNF761"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN848EDF|/analyses/ENCAN848EDF/} has in progress subobject document {85cdf617-cf5e-4a75-b23e-e161109afa8f|/documents/85cdf617-cf5e-4a75-b23e-e161109afa8f/} audit_internal_action: Released analysis {ENCAN848EDF|/analyses/ENCAN848EDF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF651ZQR|/files/ENCFF651ZQR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF651ZQR|/files/ENCFF651ZQR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF210QQB|/files/ENCFF210QQB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF210QQB|/files/ENCFF210QQB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR622AMZ | float |
TF_ChIP-seq_ENCSR622AMZ |
TF_ChIP-seq ENCSR622AMZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761" and target="ZNF761"]
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[9.98, 438] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF670IOD.bed.gz | 292.63 KB | b50e469b3bfb4d780ba45162bd3cc3d5 |
| ENCFF670IOD.bed.gz.dvc | 100.0 B | 696d70dfbb211976d4d615c1010f38a2 |
| ENCFF670IOD.tabix.bed.gz | 239.76 KB | 2a2422d46b585a11ef30fa45547c6eb7 |
| ENCFF670IOD.tabix.bed.gz.dvc | 106.0 B | 6e3d608aa8ec461fad22d90974d93b94 |
| ENCFF670IOD.tabix.bed.gz.tbi | 92.95 KB | baf2fa609e963ee8cc8a49cefb14a4b0 |
| ENCFF670IOD.tabix.bed.gz.tbi.dvc | 109.0 B | 714f2e5df77684afafb7249c283be026 |
| genomic_resource.yaml | 4.46 KB | 3700577d9d0637ab16825ab8b5d7ee84 |
| genomic_resource_original.yaml | 4.3 KB | da30129c7ef95131e1b913d50776deef |
| statistics/ |