TF_ChIP-seq_ENCSR621PAN
TF_ChIP-seq ENCSR621PAN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP" and target="HINFP"]
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| Id: | TF_ChIP-seq/ENCSR621PAN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR621PAN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP" and target="HINFP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HINFP output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN373LSY|/analyses/ENCAN373LSY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN373LSY|/analyses/ENCAN373LSY/} has in progress subobject document {a9c5e52d-2a1d-4d94-891a-8782bc99ea31|/documents/a9c5e52d-2a1d-4d94-891a-8782bc99ea31/} audit_warning: Processed alignments file {ENCFF895XOF|/files/ENCFF895XOF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19223135 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HINFP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF403LHV|/files/ENCFF403LHV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF403LHV|/files/ENCFF403LHV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF895XOF|/files/ENCFF895XOF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF895XOF|/files/ENCFF895XOF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR621PAN | float |
TF_ChIP-seq_ENCSR621PAN |
TF_ChIP-seq ENCSR621PAN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP" and target="HINFP"]
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[8.3, 846] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF445FCL.bed.gz | 243.38 KB | c3b28b5488f14d064183f2ee11ceb979 |
| ENCFF445FCL.bed.gz.dvc | 100.0 B | dfe06ea7fb41c8cc5ae9b0ac03e4dd6f |
| ENCFF445FCL.tabix.bed.gz | 195.29 KB | 3f19eaaeeb7c324f69be7800d450a0c1 |
| ENCFF445FCL.tabix.bed.gz.dvc | 106.0 B | 08f5f9f3fef4c600b12e999882fbdc7d |
| ENCFF445FCL.tabix.bed.gz.tbi | 89.38 KB | eb664e6432923947edb4eec9fc0a2a38 |
| ENCFF445FCL.tabix.bed.gz.tbi.dvc | 109.0 B | c4a2c4102f2f32a92c07fe7025f93770 |
| genomic_resource.yaml | 4.93 KB | 12ef71abe0f4377db33b2c0e1d64aa0a |
| genomic_resource_original.yaml | 4.76 KB | f98042e2cad00747be29bc4f9b534d8c |
| statistics/ |