TF_ChIP-seq_ENCSR620YNB
TF_ChIP-seq ENCSR620YNB [biosample_summary="Homo sapiens HepG2" and target="KAT2B"]
×
| Id: | TF_ChIP-seq/ENCSR620YNB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR620YNB [biosamplesummary="Homo sapiens HepG2" and target="KAT2B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN756BRS|/analyses/ENCAN756BRS/} has in progress subobject document {49d15f0b-0b56-49b9-b0af-ef02fe611154|/documents/49d15f0b-0b56-49b9-b0af-ef02fe611154/} audit_internal_action: Released analysis {ENCAN756BRS|/analyses/ENCAN756BRS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF097TWB|/files/ENCFF097TWB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19573854 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT2B-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF029AHW|/files/ENCFF029AHW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16887659 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT2B-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF132RKR|/files/ENCFF132RKR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.35 and a self consistency ratio of 2.46. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR620YNB | float |
TF_ChIP-seq_ENCSR620YNB |
TF_ChIP-seq ENCSR620YNB [biosample_summary="Homo sapiens HepG2" and target="KAT2B"]
|
|
[5.1, 540] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF132RKR.bed.gz | 44.05 KB | e217233a280355390654bce101f124aa |
| ENCFF132RKR.bed.gz.dvc | 99.0 B | a612d8123a8c990be4bc80736cb06d7b |
| ENCFF132RKR.tabix.bed.gz | 31.53 KB | c84cb451ddd3045135a7a1507aec613c |
| ENCFF132RKR.tabix.bed.gz.dvc | 105.0 B | 56249dc0a2c6de9f4d732017740f3f09 |
| ENCFF132RKR.tabix.bed.gz.tbi | 31.1 KB | 6793b8105a4422c2946860a94b20498f |
| ENCFF132RKR.tabix.bed.gz.tbi.dvc | 109.0 B | 22633d159754a1b4e5238e9d28e99782 |
| genomic_resource.yaml | 3.1 KB | 7d7e0e61da247e9fca2bc3f87a7266de |
| genomic_resource_original.yaml | 3.01 KB | ecf3ebe58538fe25023b9a440c3fac6a |
| statistics/ |