type: position_score
table:
  filename: ENCFF086CSF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR620VIC
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR620VIC [TISSUE: Homo sapiens K562 stably expressing CEBPG,
    TARGET: CEBPG]'
  description: '**status**: archived


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: stably expressing C-terminal eGFP-tagged CEBPG


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN730FKQ|/analyses/ENCAN730FKQ/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF086CSF|/files/ENCFF086CSF/} processed by ChIP-seq
    ENCODE3 GRCh38 pipeline have a rescue ratio of 1.13 and a self consistency ratio
    of 54.04. According to ENCODE standards, having both rescue ratio and self consistency
    ratio values < 2 is recommended, but having only one of the ratio values < 2 is
    acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF707BHB|/files/ENCFF707BHB/} processed by ChIP-seq
    ENCODE3 GRCh38 pipeline have a rescue ratio of 1.13 and a self consistency ratio
    of 54.04. According to ENCODE standards, having both rescue ratio and self consistency
    ratio values < 2 is recommended, but having only one of the ratio values < 2 is
    acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR620VIC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: stably expressing C-terminal eGFP-tagged CEBPG
    biosample_summary: Homo sapiens K562 stably expressing CEBPG
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR620VIC
    date_created: '2016-03-11T20:50:56.062745+00:00'
    date_released: '2016-06-13'
    submitter_comment: ''
    target: CEBPG
