TF_ChIP-seq_ENCSR620DBD
TF_ChIP-seq ENCSR620DBD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14" and target="ZFP14"]
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| Id: | TF_ChIP-seq/ENCSR620DBD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR620DBD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14" and target="ZFP14"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN918JUT|/analyses/ENCAN918JUT/} has in progress subobject document {3a70fbcb-c9ef-4329-9da0-8377508a1ef3|/documents/3a70fbcb-c9ef-4329-9da0-8377508a1ef3/} audit_internal_action: Released analysis {ENCAN918JUT|/analyses/ENCAN918JUT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF147PCK|/files/ENCFF147PCK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18329562 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZFP14-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF610QSR|/files/ENCFF610QSR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF610QSR|/files/ENCFF610QSR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF147PCK|/files/ENCFF147PCK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF147PCK|/files/ENCFF147PCK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR620DBD | float |
TF_ChIP-seq_ENCSR620DBD |
TF_ChIP-seq ENCSR620DBD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14" and target="ZFP14"]
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[6.81, 241] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF800VNW.bed.gz | 46.38 KB | 816faaa8adb00646cd5c19bc980a24ff |
| ENCFF800VNW.bed.gz.dvc | 99.0 B | 9d4ced6a13e09291307ceddead540aed |
| ENCFF800VNW.tabix.bed.gz | 33.04 KB | 4032f6a131305a8fca44b5bfa1e1bbcc |
| ENCFF800VNW.tabix.bed.gz.dvc | 105.0 B | 6c4bd01b1be25071ebcc09714b43b37f |
| ENCFF800VNW.tabix.bed.gz.tbi | 24.65 KB | 150696b275d9ad553dd71587a6af23a3 |
| ENCFF800VNW.tabix.bed.gz.tbi.dvc | 109.0 B | c51abc8f3ba301f38c47a6f384572fd0 |
| genomic_resource.yaml | 4.93 KB | 8ec5d321b3bd0ebb3a42a81270add9fb |
| genomic_resource_original.yaml | 4.76 KB | 9453c207b6c5e32bdb4c8ef4f19f9e06 |
| statistics/ |