TF_ChIP-seq_ENCSR619UPN
TF_ChIP-seq ENCSR619UPN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF133" and target="ZNF133"]
×
| Id: | TF_ChIP-seq/ENCSR619UPN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR619UPN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF133" and target="ZNF133"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF133 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN347GPM|/analyses/ENCAN347GPM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN347GPM|/analyses/ENCAN347GPM/} has in progress subobject document {f89704fc-e509-4954-9289-cacd960adf67|/documents/f89704fc-e509-4954-9289-cacd960adf67/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305BGZ|/files/ENCFF305BGZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305BGZ|/files/ENCFF305BGZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305VIX|/files/ENCFF305VIX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305VIX|/files/ENCFF305VIX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.54. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR619UPN | float |
TF_ChIP-seq_ENCSR619UPN |
TF_ChIP-seq ENCSR619UPN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF133" and target="ZNF133"]
|
|
[16.2, 677] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF810OHB.bed.gz | 29.95 KB | 6ba15fa2e9762fce5b6d2398d24afed0 |
| ENCFF810OHB.bed.gz.dvc | 99.0 B | cf0e66c49cd6ecff31799ffae8158008 |
| ENCFF810OHB.tabix.bed.gz | 18.83 KB | 7fe9c75fae9b1dd310c9d750d30327f7 |
| ENCFF810OHB.tabix.bed.gz.dvc | 105.0 B | 43615b8ad4a4af7fba23225d683d72e8 |
| ENCFF810OHB.tabix.bed.gz.tbi | 17.93 KB | 842f1936a9ab0baf41ac216680d2c8bd |
| ENCFF810OHB.tabix.bed.gz.tbi.dvc | 109.0 B | 1d629951f6a3d267e3c4da6e824efa49 |
| genomic_resource.yaml | 4.45 KB | adb0feab3331566cff8d277669cf2ede |
| genomic_resource_original.yaml | 4.28 KB | 042f55e90478798ebf57395f631cf293 |
| statistics/ |