TF_ChIP-seq_ENCSR619GFP
TF_ChIP-seq ENCSR619GFP [biosample_summary="Homo sapiens K562 stably expressing HINFP" and target="HINFP"]
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| Id: | TF_ChIP-seq/ENCSR619GFP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR619GFP [biosamplesummary="Homo sapiens K562 stably expressing HINFP" and target="HINFP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged HINFP output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN230MGH|/analyses/ENCAN230MGH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF290VXO|/files/ENCFF290VXO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19156184 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HINFP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF311MHB|/files/ENCFF311MHB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19873224 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HINFP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF290VXO|/files/ENCFF290VXO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF290VXO|/files/ENCFF290VXO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR619GFP | float |
TF_ChIP-seq_ENCSR619GFP |
TF_ChIP-seq ENCSR619GFP [biosample_summary="Homo sapiens K562 stably expressing HINFP" and target="HINFP"]
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[30.3, 5.81e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF265LKN.bed.gz | 125.51 KB | 38e7c9a347317a014c942a4fb187d1c6 |
| ENCFF265LKN.bed.gz.dvc | 100.0 B | be8f8bc4392bfdebcc7ca78406f4a40e |
| ENCFF265LKN.tabix.bed.gz | 98.59 KB | 349e3372b6fdbe434244949227c12e50 |
| ENCFF265LKN.tabix.bed.gz.dvc | 106.0 B | 4b97776117bbae2967c763e12050f818 |
| ENCFF265LKN.tabix.bed.gz.tbi | 64.03 KB | ca9ad1a8fe4e11cc8e862f9b81af99b5 |
| ENCFF265LKN.tabix.bed.gz.tbi.dvc | 109.0 B | 58f0ed11ce0312f49ef94099e9efa9a0 |
| genomic_resource.yaml | 3.69 KB | 767e39a7a41c98ee4aabaa8daf457f48 |
| genomic_resource_original.yaml | 3.58 KB | 24eea4554fd05e688c15de100b9694bd |
| statistics/ |