TF_ChIP-seq_ENCSR618HNF
TF_ChIP-seq ENCSR618HNF [biosample_summary="Homo sapiens HEK293" and target="TRIM28"]
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| Id: | TF_ChIP-seq/ENCSR618HNF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR618HNF [biosamplesummary="Homo sapiens HEK293" and target="TRIM28"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN780HSJ|/analyses/ENCAN780HSJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN780HSJ|/analyses/ENCAN780HSJ/} has in progress subobject document {a65d0080-c0b1-40ff-985a-65d61c381815|/documents/a65d0080-c0b1-40ff-985a-65d61c381815/} audit_warning: Processed alignments file {ENCFF339MFJ|/files/ENCFF339MFJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19869993 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TRIM28-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF339MFJ|/files/ENCFF339MFJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF339MFJ|/files/ENCFF339MFJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR618HNF | float |
TF_ChIP-seq_ENCSR618HNF |
TF_ChIP-seq ENCSR618HNF [biosample_summary="Homo sapiens HEK293" and target="TRIM28"]
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[11.2, 259] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211HPP.bed.gz | 357.96 KB | 1a169fe2fc6443e7da5852f3ed504e49 |
| ENCFF211HPP.bed.gz.dvc | 100.0 B | 336d046ddb26c596aaf3de738786e687 |
| ENCFF211HPP.tabix.bed.gz | 280.86 KB | 8c5c717b80b5bd232242d8043598fce2 |
| ENCFF211HPP.tabix.bed.gz.dvc | 106.0 B | b2a8df91b1cde96ff03f2c62ce0da980 |
| ENCFF211HPP.tabix.bed.gz.tbi | 129.23 KB | d1a892940d194776d177417d9dfc812a |
| ENCFF211HPP.tabix.bed.gz.tbi.dvc | 110.0 B | 143277c022a4bcfb06bcc20b7c03646b |
| genomic_resource.yaml | 3.46 KB | db512f3909070b9df2c391e9fb4a2879 |
| genomic_resource_original.yaml | 3.36 KB | 7180ac91da4fdc96f62ea1de808a5dee |
| statistics/ |