TF_ChIP-seq_ENCSR618GDK
TF_ChIP-seq ENCSR618GDK [biosample_summary="Homo sapiens K562" and target="CEBPZ"]
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| Id: | TF_ChIP-seq/ENCSR618GDK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR618GDK [biosamplesummary="Homo sapiens K562" and target="CEBPZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 4 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN719RAT|/analyses/ENCAN719RAT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN719RAT|/analyses/ENCAN719RAT/} has in progress subobject document {ef1ee60f-4eee-4021-9a5a-0cfb84a7db5a|/documents/ef1ee60f-4eee-4021-9a5a-0cfb84a7db5a/} audit_warning: Processed alignments file {ENCFF476ENU|/files/ENCFF476ENU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17529046 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPZ-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF961RUD|/files/ENCFF961RUD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.89. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF588GNU|/files/ENCFF588GNU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR618GDK | float |
TF_ChIP-seq_ENCSR618GDK |
TF_ChIP-seq ENCSR618GDK [biosample_summary="Homo sapiens K562" and target="CEBPZ"]
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[5.04, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF588GNU.bed.gz | 28.81 KB | d80b1ae5174a0d8801a8c567adbe0b2e |
| ENCFF588GNU.bed.gz.dvc | 99.0 B | 280fe730cbd9f123f5e8034f07f22bd0 |
| ENCFF588GNU.tabix.bed.gz | 19.07 KB | 2bee1dd4ca9b3cc0f9b4193ac37f3f7e |
| ENCFF588GNU.tabix.bed.gz.dvc | 105.0 B | 3417178a9aba4b6e9cc1a0dd2ec809d8 |
| ENCFF588GNU.tabix.bed.gz.tbi | 18.75 KB | 9c6d36b6adbf69eb3a71f90d4bde8cc8 |
| ENCFF588GNU.tabix.bed.gz.tbi.dvc | 109.0 B | da8937a158774050ec0d7d6f2e4df752 |
| genomic_resource.yaml | 3.24 KB | b35f136dafd71ec272d8407509990bca |
| genomic_resource_original.yaml | 3.14 KB | e0735450b93ad972e6a90432295c772a |
| statistics/ |