TF_ChIP-seq_ENCSR618END
TF_ChIP-seq ENCSR618END [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430" and target="ZNF430"]
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| Id: | TF_ChIP-seq/ENCSR618END |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR618END [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430" and target="ZNF430"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN652VNG|/analyses/ENCAN652VNG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF326YFQ|/files/ENCFF326YFQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF326YFQ|/files/ENCFF326YFQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF746UDI|/files/ENCFF746UDI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF746UDI|/files/ENCFF746UDI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR618END | float |
TF_ChIP-seq_ENCSR618END |
TF_ChIP-seq ENCSR618END [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430" and target="ZNF430"]
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[11, 551] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF632NSF.bed.gz | 406.4 KB | 69acf61c23510f742349ab4f0cd0e913 |
| ENCFF632NSF.bed.gz.dvc | 100.0 B | 947be9d4f436097367e42a4c85615c28 |
| ENCFF632NSF.tabix.bed.gz | 323.65 KB | b9322ce2bc71a8a26539e7cd2004b940 |
| ENCFF632NSF.tabix.bed.gz.dvc | 106.0 B | aa82bfc553057c41694843c3f820713c |
| ENCFF632NSF.tabix.bed.gz.tbi | 117.15 KB | 470104bba47199611cb885a8df219cfc |
| ENCFF632NSF.tabix.bed.gz.tbi.dvc | 110.0 B | 57992b1e770f98578b45990e28a694cd |
| genomic_resource.yaml | 4.24 KB | 12ba83c1353eb2ccd8a7bef720b6e204 |
| genomic_resource_original.yaml | 4.07 KB | 46051b39238b18840043019760389d5c |
| statistics/ |