TF_ChIP-seq_ENCSR617RSQ
TF_ChIP-seq ENCSR617RSQ [biosample_summary="Homo sapiens PC-3" and target="EZH2phosphoT487"]
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| Id: | TF_ChIP-seq/ENCSR617RSQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR617RSQ [biosamplesummary="Homo sapiens PC-3" and target="EZH2phosphoT487"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN802SBZ|/analyses/ENCAN802SBZ/} has in progress subobject document {564a51d4-e12b-4d8f-a0cc-040dcec8ce2b|/documents/564a51d4-e12b-4d8f-a0cc-040dcec8ce2b/} audit_internal_action: Released analysis {ENCAN802SBZ|/analyses/ENCAN802SBZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF609IJZ|/files/ENCFF609IJZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF609IJZ|/files/ENCFF609IJZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF728EOQ|/files/ENCFF728EOQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF728EOQ|/files/ENCFF728EOQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.82. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF610KOH|/files/ENCFF610KOH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR617RSQ | float |
TF_ChIP-seq_ENCSR617RSQ |
TF_ChIP-seq ENCSR617RSQ [biosample_summary="Homo sapiens PC-3" and target="EZH2phosphoT487"]
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[9.45, 581] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF610KOH.bed.gz | 72.64 KB | 2cde4aa1583bb10c71eab28f680b44a5 |
| ENCFF610KOH.bed.gz.dvc | 99.0 B | 790b387348c6b368bbde6fa41be38343 |
| ENCFF610KOH.tabix.bed.gz | 53.98 KB | 6fa8e89ee4622ec51316b0ea1aee3e79 |
| ENCFF610KOH.tabix.bed.gz.dvc | 105.0 B | 2a3a5c2d23acb6e9d548517d68731c7d |
| ENCFF610KOH.tabix.bed.gz.tbi | 32.13 KB | c40a7de1bbb96951a9aa24d80c242993 |
| ENCFF610KOH.tabix.bed.gz.tbi.dvc | 109.0 B | e435a67387fccca46d5bd9a4ff6dad6a |
| genomic_resource.yaml | 4.75 KB | 2e05d8a318126be948699c588e4986c7 |
| genomic_resource_original.yaml | 4.65 KB | 1a8d09f950958a2b5fc5b6d1f4c1b47b |
| statistics/ |