TF_ChIP-seq_ENCSR617POJ
TF_ChIP-seq ENCSR617POJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1" and target="ZFP1"]
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| Id: | TF_ChIP-seq/ENCSR617POJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR617POJ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1" and target="ZFP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN786UMM|/analyses/ENCAN786UMM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN786UMM|/analyses/ENCAN786UMM/} has in progress subobject document {b4431189-5a1c-41fc-9789-455e05f76d35|/documents/b4431189-5a1c-41fc-9789-455e05f76d35/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF127ODS|/files/ENCFF127ODS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF127ODS|/files/ENCFF127ODS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF463LXE|/files/ENCFF463LXE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF463LXE|/files/ENCFF463LXE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR617POJ | float |
TF_ChIP-seq_ENCSR617POJ |
TF_ChIP-seq ENCSR617POJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1" and target="ZFP1"]
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[15.7, 1.26e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF795AWO.bed.gz | 64.88 KB | 16303e76c144e51a71cfe91bab023ba0 |
| ENCFF795AWO.bed.gz.dvc | 99.0 B | 3ab0b1932390df479fa92b0a3d762b9b |
| ENCFF795AWO.tabix.bed.gz | 42.94 KB | df78966e7e2b8fda066f87b4f5a47562 |
| ENCFF795AWO.tabix.bed.gz.dvc | 105.0 B | 937132e2a33add4e810dfceabcd92263 |
| ENCFF795AWO.tabix.bed.gz.tbi | 34.76 KB | b473f447d088ebd00d1f023395b5cb67 |
| ENCFF795AWO.tabix.bed.gz.tbi.dvc | 109.0 B | f25fa31171f649d17ac4540defcdba63 |
| genomic_resource.yaml | 4.43 KB | 0a552f9d68f4ff746fc9a05e2eeb422f |
| genomic_resource_original.yaml | 4.27 KB | 535dbc38c0d39ddb847d97d53e3f3e29 |
| statistics/ |