TF_ChIP-seq_ENCSR613RDS
TF_ChIP-seq ENCSR613RDS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619" and target="ZNF619"]
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| Id: | TF_ChIP-seq/ENCSR613RDS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR613RDS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619" and target="ZNF619"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has replaced subobject file {e81bb737-aadd-4035-9056-2ba11d3c33d5|/files/e81bb737-aadd-4035-9056-2ba11d3c33d5/} audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has in progress subobject document {c886a418-4041-4aab-a7b3-4501ca0b91b2|/documents/c886a418-4041-4aab-a7b3-4501ca0b91b2/} audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has replaced subobject file {266462e1-daea-40d1-a0fa-504856e39448|/files/266462e1-daea-40d1-a0fa-504856e39448/} audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has replaced subobject file {c6cbfabd-ee69-459f-a81d-9d89d73e7be9|/files/c6cbfabd-ee69-459f-a81d-9d89d73e7be9/} audit_internal_action: Released analysis {ENCAN049SAA|/analyses/ENCAN049SAA/} has replaced subobject file {626d4d31-80ee-4e74-8130-8d635f25ca78|/files/626d4d31-80ee-4e74-8130-8d635f25ca78/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF865LEA|/files/ENCFF865LEA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF865LEA|/files/ENCFF865LEA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF512KMP|/files/ENCFF512KMP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF512KMP|/files/ENCFF512KMP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR613RDS | float |
TF_ChIP-seq_ENCSR613RDS |
TF_ChIP-seq ENCSR613RDS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619" and target="ZNF619"]
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[10.6, 283] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF898ZHK.bed.gz | 208.6 KB | bbeb4f161a6aa444ccc9fa5b56f03dff |
| ENCFF898ZHK.bed.gz.dvc | 100.0 B | 5ad2acbac8f0a3e63d3e2c2d3246b1a3 |
| ENCFF898ZHK.tabix.bed.gz | 164.86 KB | c04ec3c83df6e82d912ecfe172c4bf40 |
| ENCFF898ZHK.tabix.bed.gz.dvc | 106.0 B | 01beaf16dbe1ce4032dfa91f7593aa7a |
| ENCFF898ZHK.tabix.bed.gz.tbi | 76.07 KB | 11147717e00dd78bb32afad3ac47a585 |
| ENCFF898ZHK.tabix.bed.gz.tbi.dvc | 109.0 B | 24f7d622708b7c282ea75a6c6f291183 |
| genomic_resource.yaml | 5.25 KB | 1e407eaf116642122df26fec1d3a3e92 |
| genomic_resource_original.yaml | 5.09 KB | 34bf6b0d74df56c1693c9e222e471367 |
| statistics/ |