TF_ChIP-seq_ENCSR612XVQ
TF_ChIP-seq ENCSR612XVQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20" and target="PHF20"]
×
| Id: | TF_ChIP-seq/ENCSR612XVQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR612XVQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20" and target="PHF20"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PHF20 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN857GBT|/analyses/ENCAN857GBT/} has in progress subobject document {21560420-c7cd-4c05-a3cf-f43db039fd9c|/documents/21560420-c7cd-4c05-a3cf-f43db039fd9c/} audit_internal_action: Released analysis {ENCAN857GBT|/analyses/ENCAN857GBT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF671XZI|/files/ENCFF671XZI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF671XZI|/files/ENCFF671XZI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF948PTC|/files/ENCFF948PTC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF948PTC|/files/ENCFF948PTC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.00. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR612XVQ | float |
TF_ChIP-seq_ENCSR612XVQ |
TF_ChIP-seq ENCSR612XVQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20" and target="PHF20"]
|
|
[10.3, 628] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF635XBX.bed.gz | 318.36 KB | bba67f1d987e8cf3697333f1d329601e |
| ENCFF635XBX.bed.gz.dvc | 100.0 B | a1fafaf67a74d1a33daa504cf41d60f3 |
| ENCFF635XBX.tabix.bed.gz | 251.66 KB | d29237caac09e9bd8db67e9c585f5efa |
| ENCFF635XBX.tabix.bed.gz.dvc | 106.0 B | 16b88047c27968d1673269945ef21fb8 |
| ENCFF635XBX.tabix.bed.gz.tbi | 101.63 KB | a210959b3470c1a66a6b4e81a057f2ae |
| ENCFF635XBX.tabix.bed.gz.tbi.dvc | 110.0 B | 30edfb850bc901d4d42bdeb5b4621e5d |
| genomic_resource.yaml | 4.44 KB | edacfbedeb13c9c44c68d11b0359708f |
| genomic_resource_original.yaml | 4.28 KB | 0d2d65ed3f928e787cabaecaeb97d399 |
| statistics/ |