TF_ChIP-seq_ENCSR611WZO
TF_ChIP-seq ENCSR611WZO [biosample_summary="Homo sapiens HeLa-S3" and target="SREBF2"]
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| Id: | TF_ChIP-seq/ENCSR611WZO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR611WZO [biosamplesummary="Homo sapiens HeLa-S3" and target="SREBF2"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN741BVR|/analyses/ENCAN741BVR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138BUP|/files/ENCFF138BUP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138BUP|/files/ENCFF138BUP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR611WZO | float |
TF_ChIP-seq_ENCSR611WZO |
TF_ChIP-seq ENCSR611WZO [biosample_summary="Homo sapiens HeLa-S3" and target="SREBF2"]
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[16.6, 3.58e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF365ICU.bed.gz | 93.46 KB | 452936171288c14882683e4db423b6c3 |
| ENCFF365ICU.bed.gz.dvc | 99.0 B | 8fce2df29731005a2a559a6ccd4166e1 |
| ENCFF365ICU.tabix.bed.gz | 64.37 KB | b4e66260844a9001ba27ebc9094a9485 |
| ENCFF365ICU.tabix.bed.gz.dvc | 105.0 B | 8378082102c20d546ff93d1e7046a249 |
| ENCFF365ICU.tabix.bed.gz.tbi | 42.07 KB | 3ddc6de74137fd50dab8d259638aa07e |
| ENCFF365ICU.tabix.bed.gz.tbi.dvc | 109.0 B | e28b11d3fa8d06f1a4a138e438e99569 |
| genomic_resource.yaml | 2.65 KB | d5f436d9a5e2976862764a2a2999d4a8 |
| genomic_resource_original.yaml | 2.55 KB | b0109fbd804369a3df6f04992b2d975b |
| statistics/ |