TF_ChIP-seq_ENCSR609ZLF
TF_ChIP-seq ENCSR609ZLF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431" and target="ZNF431"]
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| Id: | TF_ChIP-seq/ENCSR609ZLF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR609ZLF [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431" and target="ZNF431"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN375LKI|/analyses/ENCAN375LKI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF401SRE|/files/ENCFF401SRE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF401SRE|/files/ENCFF401SRE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.07. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF098RPD|/files/ENCFF098RPD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF098RPD|/files/ENCFF098RPD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR609ZLF | float |
TF_ChIP-seq_ENCSR609ZLF |
TF_ChIP-seq ENCSR609ZLF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431" and target="ZNF431"]
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[9.35, 765] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442RYH.bed.gz | 182.95 KB | 669a8026899ad806b39d40da6c2e66d1 |
| ENCFF442RYH.bed.gz.dvc | 100.0 B | 66de93a8a96dbcd6958abf7411c8bbee |
| ENCFF442RYH.tabix.bed.gz | 137.26 KB | b2f2e6746d8faa3c66c360b5203cdd36 |
| ENCFF442RYH.tabix.bed.gz.dvc | 106.0 B | c16ce1d88637198ba00a980e782f82dd |
| ENCFF442RYH.tabix.bed.gz.tbi | 74.83 KB | 3e5e64b1769b9f0b98304797d0300617 |
| ENCFF442RYH.tabix.bed.gz.tbi.dvc | 109.0 B | 91b7f8aabb78d4cafe82421886e3e7c9 |
| genomic_resource.yaml | 4.24 KB | 2526fa42aa3162b69db36d1a1fdec117 |
| genomic_resource_original.yaml | 4.07 KB | 186c528e6a6a3d9bf25766c4ed1145d6 |
| statistics/ |