TF_ChIP-seq_ENCSR608XRC
TF_ChIP-seq ENCSR608XRC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526" and target="ZNF526"]
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| Id: | TF_ChIP-seq/ENCSR608XRC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR608XRC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526" and target="ZNF526"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN420EEX|/analyses/ENCAN420EEX/} has in progress subobject document {c2b7e8af-6bb7-4b56-a983-a20c1e0ec7a4|/documents/c2b7e8af-6bb7-4b56-a983-a20c1e0ec7a4/} audit_internal_action: Released analysis {ENCAN420EEX|/analyses/ENCAN420EEX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF083FVR|/files/ENCFF083FVR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17024789 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF526-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF083FVR|/files/ENCFF083FVR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF083FVR|/files/ENCFF083FVR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF112AUC|/files/ENCFF112AUC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF112AUC|/files/ENCFF112AUC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR608XRC | float |
TF_ChIP-seq_ENCSR608XRC |
TF_ChIP-seq ENCSR608XRC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526" and target="ZNF526"]
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[6.5, 714] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF753CVD.bed.gz | 102.36 KB | f65d10feb965ad4d2c9a1fdf596d4369 |
| ENCFF753CVD.bed.gz.dvc | 100.0 B | b34db6404b8b2af75d2a2da8017ceadd |
| ENCFF753CVD.tabix.bed.gz | 73.77 KB | baa57aac7d8439bc9d9faa477630c395 |
| ENCFF753CVD.tabix.bed.gz.dvc | 105.0 B | dfc6ef96dd801a23a9c23072945886a9 |
| ENCFF753CVD.tabix.bed.gz.tbi | 47.73 KB | e62584fbf79a83b6952b1d775c3f37ae |
| ENCFF753CVD.tabix.bed.gz.tbi.dvc | 109.0 B | b9ea676b94203f04cc0e27796fe82413 |
| genomic_resource.yaml | 4.94 KB | a0121c8cac5e0aca3cda96ce79ab4239 |
| genomic_resource_original.yaml | 4.77 KB | 43ed19600cc269b615463b9f87089eba |
| statistics/ |