TF_ChIP-seq_ENCSR606LDL
TF_ChIP-seq ENCSR606LDL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1" and target="DNMT1"]
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| Id: | TF_ChIP-seq/ENCSR606LDL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR606LDL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1" and target="DNMT1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN027ROD|/analyses/ENCAN027ROD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN027ROD|/analyses/ENCAN027ROD/} has in progress subobject document {08ebac62-24aa-4839-8eba-82ce2df56445|/documents/08ebac62-24aa-4839-8eba-82ce2df56445/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF229VCK|/files/ENCFF229VCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF229VCK|/files/ENCFF229VCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.89. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF678QYY|/files/ENCFF678QYY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF678QYY|/files/ENCFF678QYY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR606LDL | float |
TF_ChIP-seq_ENCSR606LDL |
TF_ChIP-seq ENCSR606LDL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1" and target="DNMT1"]
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[11, 313] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF622GUA.bed.gz | 159.5 KB | 1630967ff14a06d35464e9d239d4f299 |
| ENCFF622GUA.bed.gz.dvc | 100.0 B | 60473bcfde754efa0d5a6799ad8ae65a |
| ENCFF622GUA.tabix.bed.gz | 120.23 KB | 53c9e5657fa75cce45bab1b12dadf094 |
| ENCFF622GUA.tabix.bed.gz.dvc | 106.0 B | 106bb631d1af564cfe0757702bb6732f |
| ENCFF622GUA.tabix.bed.gz.tbi | 61.88 KB | b9aebd91e821097bba64c7bd08b844d6 |
| ENCFF622GUA.tabix.bed.gz.tbi.dvc | 109.0 B | 77967a7cea5247ce398284c32d696b77 |
| genomic_resource.yaml | 4.44 KB | 4a17ffa2dc43bbbdc494a7543259e1c4 |
| genomic_resource_original.yaml | 4.28 KB | 65f826d5449ae00d87d9e20b8df0b599 |
| statistics/ |