TF_ChIP-seq_ENCSR606KTL
TF_ChIP-seq ENCSR606KTL [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239" and target="ZNF239"]
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| Id: | TF_ChIP-seq/ENCSR606KTL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR606KTL [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239" and target="ZNF239"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN619DAQ|/analyses/ENCAN619DAQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN619DAQ|/analyses/ENCAN619DAQ/} has in progress subobject document {3eaa5048-ef33-4294-a2d4-78109d922d25|/documents/3eaa5048-ef33-4294-a2d4-78109d922d25/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF576IWC|/files/ENCFF576IWC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF576IWC|/files/ENCFF576IWC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF519CGZ|/files/ENCFF519CGZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF519CGZ|/files/ENCFF519CGZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR606KTL | float |
TF_ChIP-seq_ENCSR606KTL |
TF_ChIP-seq ENCSR606KTL [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239" and target="ZNF239"]
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[16.2, 1.16e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF569TJP.bed.gz | 118.59 KB | a28039262ad2576a146343676e993d31 |
| ENCFF569TJP.bed.gz.dvc | 100.0 B | 23e16bc4b26549be483254b237cdb13a |
| ENCFF569TJP.tabix.bed.gz | 80.12 KB | 2576bece82f262669736eefee79b7ce6 |
| ENCFF569TJP.tabix.bed.gz.dvc | 105.0 B | ad735b45cb5da3adc88a10f03a57cdd3 |
| ENCFF569TJP.tabix.bed.gz.tbi | 55.66 KB | f90cc1700b32191ed0ce03f634916b47 |
| ENCFF569TJP.tabix.bed.gz.tbi.dvc | 109.0 B | cd7a55e7f9e8271c56f21a8c6e687dc6 |
| genomic_resource.yaml | 4.45 KB | 64a7c575ba2b70a946343f103d1ec137 |
| genomic_resource_original.yaml | 4.28 KB | 56bd4ad9b3099f511ffa4a3f98b3c5ac |
| statistics/ |