TF_ChIP-seq_ENCSR605KVV
TF_ChIP-seq ENCSR605KVV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251" and target="ZNF251"]
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| Id: | TF_ChIP-seq/ENCSR605KVV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR605KVV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251" and target="ZNF251"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN807CQZ|/analyses/ENCAN807CQZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF583OUV|/files/ENCFF583OUV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF583OUV|/files/ENCFF583OUV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF948GOX|/files/ENCFF948GOX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF948GOX|/files/ENCFF948GOX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR605KVV | float |
TF_ChIP-seq_ENCSR605KVV |
TF_ChIP-seq ENCSR605KVV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251" and target="ZNF251"]
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[8.78, 296] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF878TPY.bed.gz | 60.83 KB | d419a178de7c3a9038782d0539302bb4 |
| ENCFF878TPY.bed.gz.dvc | 99.0 B | 980e16595630922ef3dc08e451696d24 |
| ENCFF878TPY.tabix.bed.gz | 42.97 KB | 96e2d90144bdc150d034cbb5d504347d |
| ENCFF878TPY.tabix.bed.gz.dvc | 105.0 B | 91b4a5fc05770f0b4717e60df181b0e4 |
| ENCFF878TPY.tabix.bed.gz.tbi | 29.23 KB | 14483dce7676f02bd0e06145a12cb4bb |
| ENCFF878TPY.tabix.bed.gz.tbi.dvc | 109.0 B | 856fe8c569ce7c0125332a176a8dd7fe |
| genomic_resource.yaml | 4.24 KB | a6d927f2e9f6bdbfec07e64f95a5dab7 |
| genomic_resource_original.yaml | 4.07 KB | 2552d71780f3b3efac73642f0cf2561d |
| statistics/ |