TF_ChIP-seq_ENCSR604WXQ
TF_ChIP-seq ENCSR604WXQ [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2" and target="MSX2"]
×
| Id: | TF_ChIP-seq/ENCSR604WXQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR604WXQ [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2" and target="MSX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MSX2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN995HMH|/analyses/ENCAN995HMH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN995HMH|/analyses/ENCAN995HMH/} has in progress subobject document {56579dd5-3d44-4992-9eb1-688a80ed6e63|/documents/56579dd5-3d44-4992-9eb1-688a80ed6e63/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF165PZX|/files/ENCFF165PZX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF165PZX|/files/ENCFF165PZX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.45. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF283FBB|/files/ENCFF283FBB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.56 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF179YRV|/files/ENCFF179YRV/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.56 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR604WXQ | float |
TF_ChIP-seq_ENCSR604WXQ |
TF_ChIP-seq ENCSR604WXQ [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2" and target="MSX2"]
|
|
[14.5, 801] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF283FBB.bed.gz | 183.86 KB | 89c571c37fe045f821daec49cafc447c |
| ENCFF283FBB.bed.gz.dvc | 100.0 B | 540dc7b98887461dfa58abeff35236de |
| ENCFF283FBB.tabix.bed.gz | 121.08 KB | d9a389f62c5bf5cc53ee5d72a26eefad |
| ENCFF283FBB.tabix.bed.gz.dvc | 106.0 B | 541421d76fc3140c62b8ca7926faaacd |
| ENCFF283FBB.tabix.bed.gz.tbi | 73.42 KB | c57f7b3bafdc21ef2fcef3b9398de513 |
| ENCFF283FBB.tabix.bed.gz.tbi.dvc | 109.0 B | 5ba9d8dae3405c6474b3e68bd191ddde |
| genomic_resource.yaml | 4.21 KB | c49f594759258118f580eb2cb0c7c083 |
| genomic_resource_original.yaml | 4.05 KB | 431cc18730fa602c621607db5120fe30 |
| statistics/ |