TF_ChIP-seq_ENCSR603BJQ
TF_ChIP-seq ENCSR603BJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"]
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| Id: | TF_ChIP-seq/ENCSR603BJQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR603BJQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN454OBW|/analyses/ENCAN454OBW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN454OBW|/analyses/ENCAN454OBW/} has in progress subobject document {64720c50-90b5-4da5-9fa5-dd72e9964d71|/documents/64720c50-90b5-4da5-9fa5-dd72e9964d71/} audit_warning: Processed alignments file {ENCFF575VPJ|/files/ENCFF575VPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 12252629 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXK1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF605GXY|/files/ENCFF605GXY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.60 and a self consistency ratio of 4.48. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF635XWY|/files/ENCFF635XWY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.60 and a self consistency ratio of 4.48. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR603BJQ | float |
TF_ChIP-seq_ENCSR603BJQ |
TF_ChIP-seq ENCSR603BJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"]
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[6.74, 473] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF605GXY.bed.gz | 430.25 KB | af464b67e0350a8c234d1e5214ca38d3 |
| ENCFF605GXY.bed.gz.dvc | 100.0 B | 161916699bd2fb7cceb7bdc77ad9e53d |
| ENCFF605GXY.tabix.bed.gz | 337.56 KB | 8ca1983c7f1b5c7cd414137f63f45649 |
| ENCFF605GXY.tabix.bed.gz.dvc | 106.0 B | 361e724eda5a59708abbf065775fc68b |
| ENCFF605GXY.tabix.bed.gz.tbi | 153.77 KB | f54794c49d4d13b1bea92bf94a30f235 |
| ENCFF605GXY.tabix.bed.gz.tbi.dvc | 110.0 B | f36dac46fe78d63159b23afdfa939afa |
| genomic_resource.yaml | 3.44 KB | 74f3802a40d8f098359e60d888d03eb9 |
| genomic_resource_original.yaml | 3.27 KB | 899769e5d247a0130d5e68f658161ac4 |
| statistics/ |