TF_ChIP-seq_ENCSR601OGE
TF_ChIP-seq ENCSR601OGE [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="HNF4A"]
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| Id: | TF_ChIP-seq/ENCSR601OGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR601OGE [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="HNF4A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN177IFH|/analyses/ENCAN177IFH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF689YYU|/files/ENCFF689YYU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF689YYU|/files/ENCFF689YYU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.20. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF295XEM|/files/ENCFF295XEM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR601OGE | float |
TF_ChIP-seq_ENCSR601OGE |
TF_ChIP-seq ENCSR601OGE [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="HNF4A"]
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[7.33, 811] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF713MCF.bed.gz | 1.2 MB | 2054296572380b63d6dedec1cf356f04 |
| ENCFF713MCF.bed.gz.dvc | 101.0 B | 550701569ca7a8a5b418b56244922eed |
| ENCFF713MCF.tabix.bed.gz | 897.66 KB | bc19c7c9fda0a0b067b35959fc797afa |
| ENCFF713MCF.tabix.bed.gz.dvc | 106.0 B | f3eada51bfdd8bb26b2dbec1d8b7c189 |
| ENCFF713MCF.tabix.bed.gz.tbi | 317.49 KB | e3807a6ba1576a1c9aa2df35f8d7874f |
| ENCFF713MCF.tabix.bed.gz.tbi.dvc | 110.0 B | 241c7f13dd50da9a4899822583f1cfae |
| genomic_resource.yaml | 3.93 KB | 8d7d947d51ec5a72a26a62818e68ba4d |
| genomic_resource_original.yaml | 3.76 KB | 3da3913ba06eb30895daecf028c37dd4 |
| statistics/ |