TF_ChIP-seq_ENCSR601KKB
TF_ChIP-seq ENCSR601KKB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3" and target="HMGXB3"]
×
| Id: | TF_ChIP-seq/ENCSR601KKB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR601KKB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3" and target="HMGXB3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN991ZDJ|/analyses/ENCAN991ZDJ/} has in progress subobject document {4a411a74-2869-4102-9180-507891fb4b1a|/documents/4a411a74-2869-4102-9180-507891fb4b1a/} audit_internal_action: Released analysis {ENCAN991ZDJ|/analyses/ENCAN991ZDJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF684UHQ|/files/ENCFF684UHQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 2.48. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF161CYU|/files/ENCFF161CYU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 2.48. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR601KKB | float |
TF_ChIP-seq_ENCSR601KKB |
TF_ChIP-seq ENCSR601KKB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3" and target="HMGXB3"]
|
|
[8.98, 808] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF684UHQ.bed.gz | 274.17 KB | 4f003da6ea47cec9eebeb47b086ef3ed |
| ENCFF684UHQ.bed.gz.dvc | 100.0 B | 0fa8155afbdd698707a8d73c236b8cb3 |
| ENCFF684UHQ.tabix.bed.gz | 212.28 KB | b8f997086c2629d566805da8f90e97b4 |
| ENCFF684UHQ.tabix.bed.gz.dvc | 106.0 B | 32140868fdc591a016a1829d9aefc965 |
| ENCFF684UHQ.tabix.bed.gz.tbi | 100.88 KB | 85e5364c7f9d9cda430649ad89ce2310 |
| ENCFF684UHQ.tabix.bed.gz.tbi.dvc | 110.0 B | 137654e34fdcfeca7fe967003cd487e6 |
| genomic_resource.yaml | 2.96 KB | 6dbe644acf456f0b4337af0a60c718da |
| genomic_resource_original.yaml | 2.79 KB | 835ba93f0f62b806120596fe33130d0b |
| statistics/ |