TF_ChIP-seq_ENCSR600SCF
TF_ChIP-seq ENCSR600SCF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SCMH1" and target="SCMH1"]
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| Id: | TF_ChIP-seq/ENCSR600SCF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR600SCF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SCMH1" and target="SCMH1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SCMH1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN109JVI|/analyses/ENCAN109JVI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF470ENK|/files/ENCFF470ENK/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.97. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF072CDJ|/files/ENCFF072CDJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF072CDJ|/files/ENCFF072CDJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF782EKY|/files/ENCFF782EKY/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.61 and a self consistency ratio of 4.25. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR600SCF | float |
TF_ChIP-seq_ENCSR600SCF |
TF_ChIP-seq ENCSR600SCF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SCMH1" and target="SCMH1"]
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[7.82, 230] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF782EKY.bed.gz | 3.63 KB | 063e120f64a8fac48cffd99f515d6848 |
| ENCFF782EKY.bed.gz.dvc | 98.0 B | 846ee752b36e85f5876a89aa3c6349da |
| ENCFF782EKY.tabix.bed.gz | 2.43 KB | ce182fa8b113a03292d5076a8348ed77 |
| ENCFF782EKY.tabix.bed.gz.dvc | 104.0 B | ade6a04b503ead73467c4d329fc45bf2 |
| ENCFF782EKY.tabix.bed.gz.tbi | 5.32 KB | a1343c2952a01f822c95d408358d3b65 |
| ENCFF782EKY.tabix.bed.gz.tbi.dvc | 108.0 B | e3a7e5a6df483457eaab4d559af8e0d5 |
| genomic_resource.yaml | 4.11 KB | b56af0f728ce155699b83fac6b9c83b0 |
| genomic_resource_original.yaml | 3.94 KB | 0ff8d4ffa906e3d2c4b8ba273c6f8d08 |
| statistics/ |