TF_ChIP-seq_ENCSR599XKG
TF_ChIP-seq ENCSR599XKG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"]
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| Id: | TF_ChIP-seq/ENCSR599XKG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR599XKG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN469WLM|/analyses/ENCAN469WLM/} has in progress subobject document {4f78c7e3-b77b-489f-b6c8-5a148f66a216|/documents/4f78c7e3-b77b-489f-b6c8-5a148f66a216/} audit_internal_action: Released analysis {ENCAN469WLM|/analyses/ENCAN469WLM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF859YTG|/files/ENCFF859YTG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19174333 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HMGXB4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF859YTG|/files/ENCFF859YTG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF859YTG|/files/ENCFF859YTG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF608MAX|/files/ENCFF608MAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF608MAX|/files/ENCFF608MAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR599XKG | float |
TF_ChIP-seq_ENCSR599XKG |
TF_ChIP-seq ENCSR599XKG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"]
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[8.63, 397] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305WWR.bed.gz | 632.09 KB | f3f2ff3e7742da759e0282602b2da2e4 |
| ENCFF305WWR.bed.gz.dvc | 100.0 B | 59faf59238c8884702fa3c38aae11824 |
| ENCFF305WWR.tabix.bed.gz | 520.27 KB | 426e63857b2709420c53c83661a036fa |
| ENCFF305WWR.tabix.bed.gz.dvc | 106.0 B | 400e0c1a91d23848a1b468e060b70a87 |
| ENCFF305WWR.tabix.bed.gz.tbi | 148.42 KB | 86e2d7454528395a6f78fffeb5f4c4cc |
| ENCFF305WWR.tabix.bed.gz.tbi.dvc | 110.0 B | 4f8ca0ae2cc62f126079809c809ccdca |
| genomic_resource.yaml | 4.94 KB | 801f53e58f0141bcced32d90908689e0 |
| genomic_resource_original.yaml | 4.77 KB | e226c1e4fd946243040c938b2befeb4f |
| statistics/ |