TF_ChIP-seq_ENCSR598GER
TF_ChIP-seq ENCSR598GER [biosample_summary="Homo sapiens K562" and target="CCAR2"]
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| Id: | TF_ChIP-seq/ENCSR598GER |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR598GER [biosamplesummary="Homo sapiens K562" and target="CCAR2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN504ANM|/analyses/ENCAN504ANM/} has in progress subobject document {4e26dbea-8391-4734-9929-790f26208e3a|/documents/4e26dbea-8391-4734-9929-790f26208e3a/} audit_internal_action: Released analysis {ENCAN504ANM|/analyses/ENCAN504ANM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF888SNS|/files/ENCFF888SNS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11085715 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CCAR2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF249LXA|/files/ENCFF249LXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11516992 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CCAR2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF249LXA|/files/ENCFF249LXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF249LXA|/files/ENCFF249LXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR598GER | float |
TF_ChIP-seq_ENCSR598GER |
TF_ChIP-seq ENCSR598GER [biosample_summary="Homo sapiens K562" and target="CCAR2"]
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[4.09, 246] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF657LFS.bed.gz | 9.99 KB | 980d74fa5aeb777ee3caa24482b07659 |
| ENCFF657LFS.bed.gz.dvc | 99.0 B | 6420f03a1714794167d5bed5bc58e574 |
| ENCFF657LFS.tabix.bed.gz | 6.84 KB | c7812ef67d7d42173a35a7144b65f224 |
| ENCFF657LFS.tabix.bed.gz.dvc | 104.0 B | bed1517c82e8af3fd3469e7daba1da51 |
| ENCFF657LFS.tabix.bed.gz.tbi | 8.63 KB | 41e49269dc3afe113f2e531a6ea3a22c |
| ENCFF657LFS.tabix.bed.gz.tbi.dvc | 108.0 B | 6191002afbc3707ae9adc62cbff042f4 |
| genomic_resource.yaml | 3.88 KB | 2729146eb27a2b8f76a59c6d25dc7b1e |
| genomic_resource_original.yaml | 3.78 KB | 68697d77d2ed27ad32f2e435f5fcf03a |
| statistics/ |