| Id: | TF_ChIP-seq/ENCSR595FAO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR595FAO [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510" and target="ZNF510"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN403RSR|/analyses/ENCAN403RSR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF347ZFD|/files/ENCFF347ZFD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF347ZFD|/files/ENCFF347ZFD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.22. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF674TSK|/files/ENCFF674TSK/}, {ENCFF572WXJ|/files/ENCFF572WXJ/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 7.91 and a self consistency ratio of 1.76. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF035RJN|/files/ENCFF035RJN/}, {ENCFF299IRD|/files/ENCFF299IRD/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 7.91 and a self consistency ratio of 1.76. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR595FAO | float |
TF_ChIP-seq_ENCSR595FAO |
TF_ChIP-seq ENCSR595FAO [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510" and target="ZNF510"]
|
 |
[14.6, 1.39e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF572WXJ.bed.gz | 101.32 KB | 660ad8e23100863f0c553b4f6850b50b |
| ENCFF572WXJ.bed.gz.dvc | 100.0 B | 2dfdf2154f16c381501ceebff334a58c |
| ENCFF572WXJ.tabix.bed.gz | 67.29 KB | e064b19cc1d8e06f68d6734622f62ea7 |
| ENCFF572WXJ.tabix.bed.gz.dvc | 105.0 B | 72fa19b4db8ba6e64b076400fbe0ab42 |
| ENCFF572WXJ.tabix.bed.gz.tbi | 54.04 KB | f1cb26c4191066d5c9a642f0be61b13b |
| ENCFF572WXJ.tabix.bed.gz.tbi.dvc | 109.0 B | 0704b79791b042ed4db03a0e527124ef |
| genomic_resource.yaml | 4.16 KB | 7dc888bb136101e8cee16217317628d6 |
| genomic_resource_original.yaml | 3.98 KB | 2099a0bbaa53c43a109fe0772ba6fa7d |
| statistics/ |