TF_ChIP-seq_ENCSR594HXD
TF_ChIP-seq ENCSR594HXD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2" and target="ELF2"]
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| Id: | TF_ChIP-seq/ENCSR594HXD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR594HXD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2" and target="ELF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ELF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN201IIP|/analyses/ENCAN201IIP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF485FXU|/files/ENCFF485FXU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF485FXU|/files/ENCFF485FXU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.01. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF259JIN|/files/ENCFF259JIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF259JIN|/files/ENCFF259JIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR594HXD | float |
TF_ChIP-seq_ENCSR594HXD |
TF_ChIP-seq ENCSR594HXD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2" and target="ELF2"]
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[28.7, 3.93e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF695PDY.bed.gz | 172.37 KB | 168bcfc8365a83b851e3b87548d14d3c |
| ENCFF695PDY.bed.gz.dvc | 100.0 B | 8570b454014a873699f1aab81e335e9e |
| ENCFF695PDY.tabix.bed.gz | 120.35 KB | e8e5735b2291ce63ae313b40bd6d7d58 |
| ENCFF695PDY.tabix.bed.gz.dvc | 106.0 B | 5960f6eb3b30fc207c3caf9d606d2ba7 |
| ENCFF695PDY.tabix.bed.gz.tbi | 68.22 KB | 364b807a626f339068a7efcc5383bd40 |
| ENCFF695PDY.tabix.bed.gz.tbi.dvc | 109.0 B | 305f98ed1c482c452f29dbce36faf36a |
| genomic_resource.yaml | 4.22 KB | 25e1978a1af32eed4ee50724651df6b5 |
| genomic_resource_original.yaml | 4.06 KB | 9201655451a8e81f6561e3e6a288dd4f |
| statistics/ |