TF_ChIP-seq_ENCSR594BNR
TF_ChIP-seq ENCSR594BNR [biosample_summary="Homo sapiens K562" and target="HNRNPL"]
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| Id: | TF_ChIP-seq/ENCSR594BNR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR594BNR [biosamplesummary="Homo sapiens K562" and target="HNRNPL"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN408CTZ|/analyses/ENCAN408CTZ/} has in progress subobject document {60b6f153-a6be-40c5-add2-59079013f237|/documents/60b6f153-a6be-40c5-add2-59079013f237/} audit_internal_action: Released analysis {ENCAN408CTZ|/analyses/ENCAN408CTZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF151KOR|/files/ENCFF151KOR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14084402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPL-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF605ZCO|/files/ENCFF605ZCO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14636522 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPL-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF605ZCO|/files/ENCFF605ZCO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF605ZCO|/files/ENCFF605ZCO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR594BNR | float |
TF_ChIP-seq_ENCSR594BNR |
TF_ChIP-seq ENCSR594BNR [biosample_summary="Homo sapiens K562" and target="HNRNPL"]
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[4.64, 351] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF854WAP.bed.gz | 136.55 KB | 9c7140674f125208cb15e4ff9dfdb922 |
| ENCFF854WAP.bed.gz.dvc | 100.0 B | 7a0bd6e926b6e56c41c7d26dcf3b91f3 |
| ENCFF854WAP.tabix.bed.gz | 110.09 KB | ecaca9be845581819019e841de1395b1 |
| ENCFF854WAP.tabix.bed.gz.dvc | 106.0 B | bbc4657f6e87433fefad14da2af0efb4 |
| ENCFF854WAP.tabix.bed.gz.tbi | 54.26 KB | 9825f62f3ce12cae04d0c7823bdcc33d |
| ENCFF854WAP.tabix.bed.gz.tbi.dvc | 109.0 B | 71ca7574f836c971e6d14bd20b99c165 |
| genomic_resource.yaml | 3.88 KB | 21a72db224edd70095d8ebd1cf15d2d3 |
| genomic_resource_original.yaml | 3.79 KB | ed436ca779c43bd0c22e72c0392d9c0b |
| statistics/ |