TF_ChIP-seq_ENCSR592ZQB
TF_ChIP-seq ENCSR592ZQB [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]
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| Id: | TF_ChIP-seq/ENCSR592ZQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR592ZQB [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN655GUY|/analyses/ENCAN655GUY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF262ZGL|/files/ENCFF262ZGL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 16661175 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting IRF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF168YVH|/files/ENCFF168YVH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.35 and a self consistency ratio of 2.95. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR592ZQB | float |
TF_ChIP-seq_ENCSR592ZQB |
TF_ChIP-seq ENCSR592ZQB [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]
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[7.01, 237] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF168YVH.bed.gz | 21.82 KB | 52519b777e9f5b0c0becded63214af92 |
| ENCFF168YVH.bed.gz.dvc | 99.0 B | 6cc3f4d26e90a93b4e4b329d58376c69 |
| ENCFF168YVH.tabix.bed.gz | 15.4 KB | 3e07f9cad7118331e7de09e4935d85c0 |
| ENCFF168YVH.tabix.bed.gz.dvc | 105.0 B | a99b8101cb6d8208ec5970759c662cf6 |
| ENCFF168YVH.tabix.bed.gz.tbi | 14.82 KB | 3f9c43a7d3c54ff08169b1dbfe295125 |
| ENCFF168YVH.tabix.bed.gz.tbi.dvc | 109.0 B | 76cd7c6bb1d2876480de19b1e71c5148 |
| genomic_resource.yaml | 2.69 KB | ec1cb7133ac6e774c872745fe6fcd8af |
| genomic_resource_original.yaml | 2.53 KB | f83703a4377b899b1d05078f8c5aabf7 |
| statistics/ |