TF_ChIP-seq_ENCSR591MYB
TF_ChIP-seq ENCSR591MYB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF746" and target="ZNF746"]
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| Id: | TF_ChIP-seq/ENCSR591MYB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR591MYB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF746" and target="ZNF746"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF746 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN369RPL|/analyses/ENCAN369RPL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF912KMC|/files/ENCFF912KMC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF912KMC|/files/ENCFF912KMC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR591MYB | float |
TF_ChIP-seq_ENCSR591MYB |
TF_ChIP-seq ENCSR591MYB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF746" and target="ZNF746"]
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[11.5, 485] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF815JML.bed.gz | 266.83 KB | 900a8e48bf2d9293a202c049aa82e222 |
| ENCFF815JML.bed.gz.dvc | 100.0 B | ee663f5d362304d853d568b5b3a9b1b3 |
| ENCFF815JML.tabix.bed.gz | 209.81 KB | f9b6c37acb7349965d28cb43fd4d8019 |
| ENCFF815JML.tabix.bed.gz.dvc | 106.0 B | 866b1fd26b47d3d380d8dc4533780ef3 |
| ENCFF815JML.tabix.bed.gz.tbi | 88.79 KB | 363d447845b768ef81d3b85e35b1abf3 |
| ENCFF815JML.tabix.bed.gz.tbi.dvc | 109.0 B | e7fc2fa11824407b0383ba66a0db1eac |
| genomic_resource.yaml | 2.97 KB | 206cb0b6800cdbee8f548c591bfc4fbb |
| genomic_resource_original.yaml | 2.81 KB | 4878fceed36453a28e7b912d985a7d57 |
| statistics/ |