TF_ChIP-seq_ENCSR591ASD
TF_ChIP-seq ENCSR591ASD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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| Id: | TF_ChIP-seq/ENCSR591ASD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR591ASD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN657BEV|/analyses/ENCAN657BEV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN657BEV|/analyses/ENCAN657BEV/} has in progress subobject document {946c5f7f-c189-438b-bc5b-b1754b1739d7|/documents/946c5f7f-c189-438b-bc5b-b1754b1739d7/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF898EHY|/files/ENCFF898EHY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF898EHY|/files/ENCFF898EHY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF828UGP|/files/ENCFF828UGP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF828UGP|/files/ENCFF828UGP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR591ASD | float |
TF_ChIP-seq_ENCSR591ASD |
TF_ChIP-seq ENCSR591ASD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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[15.5, 2.56e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF692HUD.bed.gz | 236.01 KB | 2a757edbb0176202260cf86161cc4713 |
| ENCFF692HUD.bed.gz.dvc | 100.0 B | 8c9e154b846a3e5185d592c6adb85a4c |
| ENCFF692HUD.tabix.bed.gz | 156.61 KB | 5be131e171c9f752d1707e4962b3759e |
| ENCFF692HUD.tabix.bed.gz.dvc | 106.0 B | b6dc8331aec476cfc278440eff24a37b |
| ENCFF692HUD.tabix.bed.gz.tbi | 93.58 KB | f2b92e5058770e67455d82835807e67d |
| ENCFF692HUD.tabix.bed.gz.tbi.dvc | 109.0 B | ecc27cf296ed279f404d505507771de6 |
| genomic_resource.yaml | 4.44 KB | c5c8b8995de317561f22667bbc569a8b |
| genomic_resource_original.yaml | 4.28 KB | 36863d9ae6fbec4b07fde0fd6333d46f |
| statistics/ |